Basic Information
Locus ID:
gene_22289
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 6873612 | 6884272 | + | gene_22289 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 84,013.72 Da | 48.91 | 82.79 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 3 | 253 | 3.24924E-63 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 252 | 0.062 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 43 | 0.034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 1.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 9.4E-9 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 602 | 759 | 6.2E-50 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 1.7E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 289 | 4.58E-68 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 129 | 3.7E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 130 | 293 | 2.3E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.26 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 8.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 7.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.0051 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 2.6E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.15831 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.888781 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 11.761044 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 95 | 10.495596 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.472858 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.025 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 115 | 129 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 5.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 5.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 5.4E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 762 | 19.148033 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 347 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_021860219.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X5 [Spinacia oleracea] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q918 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_206220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology