Basic Information
Locus ID:
gene_22211
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Guanylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 4939803 | 4955483 | + | gene_22211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 122,012.11 Da | 51.06 | 77.31 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01851 | GBP | 75 | 318 | 1.70151E-63 | - |
| Pfam | PF02263 | Guanylate-binding protein, N-terminal domain | 62 | 320 | 1.1E-67 | IPR015894 |
| Pfam | PF02841 | Guanylate-binding protein, C-terminal domain | 325 | 637 | 9.2E-46 | IPR003191 |
| SUPERFAMILY | SSF48340 | Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 327 | 663 | 2.62E-47 | IPR036543 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 51 | 323 | 3.69E-48 | IPR027417 |
| Gene3D | G3DSA:1.20.1000.10 | - | 326 | 623 | 1.9E-11 | - |
| Gene3D | G3DSA:1.20.5.170 | - | 676 | 818 | 1.4E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 45 | 325 | 3.3E-95 | IPR027417 |
| ProSiteProfiles | PS51715 | GB1/RHD3-type guanine nucleotide-binding (G) domain profile. | 78 | 320 | 64.132339 | IPR030386 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1035 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1019 | 1035 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| Coils | Coil | Coil | 795 | 871 | - | - |
| Coils | Coil | Coil | 629 | 677 | - | - |
| Coils | Coil | Coil | 583 | 603 | - | - |
| Coils | Coil | Coil | 704 | 787 | - | - |
| Coils | Coil | Coil | 879 | 906 | - | - |
| Coils | Coil | Coil | 551 | 571 | - | - |
| Coils | Coil | Coil | 908 | 949 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46070.1 | Guanylate-binding family protein. | 0 |
| RefSeq | XP_010686393.1 | guanylate-binding protein 3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q1MT80 | Guanylate-binding protein 4 OS=Danio rerio OX=7955 GN=gbp4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RE58 | GB1/RHD3-type G domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_083190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20248, jg22089, jg29101 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_22211, gene_6379, gene_6381, gene_6383 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah009142, Ah029374, Ah029375 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g163380, BVRB_8g182440 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1264, Sbi_jg35311, Sbi_jg41250, Sbi_jg48863 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1342, Seu_jg3447 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00017097, GOSA_00028833 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl46009, Sgl50701, Sgl74068, Sgl77542 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000008841, gene:ENSEOMG00000033331 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0012470, CQ.Regalona.r1.7BG0014670 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30073170, pistato.v30122840 |
| Apiaceae | Apium graveolens | 2 | Ag5G01352, Ag8G00887 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G004410, COCNU_03G010980, COCNU_06G006010 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103696926, gene-LOC103702467, gene-LOC103707321 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2858.V1.1, AsparagusV1_06.742.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G16206, Ftri18G06803 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G46070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000755m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g062890.2N, BniB04g015960.2N |
| Casuarinaceae | Casuarina equisetifolia | 8 | Ceq01G2149, Ceq01G2151, Ceq01G2179, Ceq05G1130, Ceq05G1131 ... |
| Casuarinaceae | Casuarina glauca | 6 | Cgl01G2393, Cgl01G2427, Cgl01G2429, Cgl01G2465, Cgl02G2278 ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g11440 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0004s00020.v1.0, Dusal.0386s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g08710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3445, nbisL1-mrna-7600 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.896 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005660 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14615 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.1405, AH07.1512, BH05.1574, BH07.1477, CH05.1777 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0110730, gene-QOZ80_2BG0164220 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0087600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015515 |
| Poaceae | Oryza coarctata | 3 | Oco03G008510, Oco04G008930, Oco10G016580 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g20410.1, LOC_Os05g48855.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G234600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505769 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G031770, Chr09G001070, Chr15G023000, Chr18G017020 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G648800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG058260, gene_TRIDC1BG067210 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G396000.1, TraesCS1B02G424400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb235320_P003, Zm00001eb295820_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-13667, nbis-gene-24862, nbis-gene-34044 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g15286, Zma_g28799 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.366, evm.TU.LG01.95, evm.TU.LG04.388 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21060 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.810, evm.TU.Scaffold_13_RagTag.292 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24042, nbisL1-mrna-30759 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6091 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19948 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.179, evm.TU.utg000027l.148 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006294, Maker00015682 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10605 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21961 |
| Salicaceae | Populus euphratica | 4 | populus_peu10013, populus_peu18119, populus_peu23936 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625173, gene-LOC132631229 |
| Solanaceae | Solanum chilense | 2 | SOLCI000618100, SOLCI004546200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002450, gene-LOC107011422 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6537 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1383 |
| Zosteraceae | Zostera marina | 1 | Zosma06g12590.v3.1 |