Basic Information
Locus ID:
gene_22194
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 4518454 | 4522999 | + | gene_22194 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 62,364.52 Da | 31.81 | 92.15 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 377 | 560 | 3.334E-87 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 18 | 179 | 6.51071E-93 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 212 | 329 | 2.1E-22 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 15 | 182 | 5.1E-35 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 423 | 536 | 5.2E-15 | IPR011766 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 207 | 353 | 4.3E-33 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 377 | 572 | 1.7E-43 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 15 | 191 | 1.52E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 372 | 559 | 1.9E-55 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 202 | 364 | 4.9E-42 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 13 | 187 | 9.3E-61 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 10 | 572 | 1.8E-209 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_021766053.1 | pyruvate decarboxylase 1-like [Chenopodium quinoa] | 0 |
| P51850 | Pyruvate decarboxylase 1 OS=Pisum sativum OX=3888 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UEQ5 | pyruvate decarboxylase OS=Sesamum indicum OX=4182 GN=LOC105175619 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology