Basic Information
Locus ID:
gene_22126
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 2889515 | 2897617 | + | gene_22126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 134,611.92 Da | 35.09 | 105.12 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 505 | 526 | 0.34 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 288 | 309 | 0.41 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 73 | 114 | 5.1E-6 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 239 | 261 | 1.3 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 1146 | 1167 | 0.52 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 338 | 396 | 1.1E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 714 | 756 | 1.1E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 929 | 988 | 2.2E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 812 | 867 | 1.1E-7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 121 | 459 | 2.12E-66 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 392 | 646 | 2.2E-50 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 938 | 1238 | 6.43E-59 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 741 | 1011 | 4.08E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 827 | 913 | 9.0E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 339 | 662 | 2.5E-90 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 914 | 1141 | 5.4E-64 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 72 | 187 | 2.9E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 188 | 275 | 4.8E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 276 | 338 | 1.3E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1142 | 1240 | 1.9E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 713 | 826 | 6.1E-22 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 310 | 336 | 160.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 550 | 576 | 380.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 189 | 215 | 140.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 952 | 978 | 56.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 502 | 528 | 280.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1191 | 1217 | 240.0 | - |
| SMART | SM00369 | LRR_typ_2 | 831 | 855 | 36.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 879 | 903 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 310 | 334 | 6.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 526 | 550 | 8.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 383 | 407 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 952 | 976 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 189 | 212 | 87.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 806 | 830 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 164 | 188 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 622 | 647 | 75.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 286 | 309 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 928 | 951 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1167 | 1190 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1024 | 1048 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 237 | 261 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1191 | 1215 | 17.0 | IPR003591 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_048493662.1 | receptor protein kinase CLAVATA1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0J8B4U2 | LRRNT_2 domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_014570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22125, gene_22126 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011420 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41641, Sgl46440 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000011472 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0003080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049220 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G21477 |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq01G0192, Ceq01G0193, Ceq01G0196, Ceq03G0864 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G0214, Cgl01G0215, Cgl03G0944 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1770, evm.TU.LG14.985 |