Basic Information
Locus ID:
gene_2204
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 8914172 | 8935408 | - | gene_2204 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 81,464.09 Da | 45.98 | 86.44 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 70 | 278 | 1.59556E-124 | - |
| CDD | cd18794 | SF2_C_RecQ | 279 | 415 | 6.1607E-73 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 310 | 405 | 1.2E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 418 | 473 | 2.5E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 90 | 258 | 5.9E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 604 | 664 | 1.2E-7 | IPR002121 |
| Pfam | PF09382 | RQC domain | 479 | 584 | 6.6E-9 | IPR018982 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 127 | 421 | 1.55E-58 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 594 | 674 | 3.92E-6 | IPR010997 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 599 | 667 | 5.3E-11 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 279 | 476 | 2.6E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 45 | 278 | 6.0E-89 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 479 | 579 | 1.3E-24 | IPR036388 |
| SMART | SM00490 | helicmild6 | 325 | 406 | 1.7E-28 | IPR001650 |
| SMART | SM00956 | RQC_2 | 483 | 580 | 3.2E-4 | IPR018982 |
| SMART | SM00487 | ultradead3 | 84 | 287 | 4.2E-28 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 81 | 506 | 3.7E-162 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 595 | 674 | 13.08919 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 296 | 445 | 20.726658 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 96 | 271 | 24.014418 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 724 | - | - |
| Coils | Coil | Coil | 2 | 36 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021768372.1 | mediator of RNA polymerase II transcription subunit 34 isoform X1 [Chenopodium quinoa] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A484LW36 | ATP-dependent DNA helicase OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS22263 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology