Basic Information
Locus ID:
gene_22026
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
NEP1-interacting
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 1617351 | 1620120 | + | gene_22026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 24,234.90 Da | 35.63 | 95.84 | 0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 171 | 214 | 5.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 218 | 4.29E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 221 | 9.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 172 | 213 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 172 | 214 | 12.533537 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20395.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010686846.1 | NEP1-interacting protein-like 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8YIF1 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19367, jg21513, jg38375 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22026 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017531 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g186290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40144, Sbi_jg50064 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1712 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011319 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl46312, Sgl51026 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000012333 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0001800 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30156660, pistato.v30158280 |
| Apiaceae | Apium graveolens | 1 | Ag4G02381 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G007770 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719115 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1248.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G33627, Ftri15G23591, Ftri3G23795 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20395.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022113m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18410.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g043480.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g05560 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-9100, nbisL1-mrna-9217, nbisL1-mrna-9218 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1868 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22986 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1873, evm.TU.LG14.1063, evm.TU.LG18.862 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g02870 |
| Salicaceae | Populus euphratica | 1 | populus_peu00284 |
| Solanaceae | Solanum chilense | 1 | SOLCI001317900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005628 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17575 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20850.v3.1 |