Basic Information
Locus ID:
gene_21971
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 644326 | 650785 | + | gene_21971 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 19,151.47 Da | 45.81 | 82.05 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 88 | 159 | 4.6E-18 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 86 | 167 | 3.02E-19 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 78 | 170 | 2.8E-20 | - |
| SMART | SM00213 | ubq_7 | 85 | 157 | 8.6E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 85 | 161 | 18.323208 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 138 | 159 | 3.3E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 96 | 116 | 3.3E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 117 | 137 | 3.3E-10 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12570.1 | ubiquitin protein ligase 5. Knock-out mutants showed accelerated senescence of leaves. | 0 |
| RefSeq | XP_010686720.1 | E3 ubiquitin-protein ligase UPL5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SU29 | E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DXW6 | E3 ubiquitin-protein ligase UPL5 OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21971 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17924 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.309 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17998 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11300 |