Basic Information
Locus ID:
gene_21962
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 573620 | 577053 | + | gene_21962 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 55,394.17 Da | 37.63 | 96.81 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 10 | 47 | 4.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 57 | 4.19E-12 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 59 | 281 | 3.79E-7 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 49 | 5.2E-7 | - |
| SMART | SM00256 | fbox_2 | 11 | 51 | 2.0E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 103 | 295 | 6.6E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 50 | 10.398279 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021719794.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0J8BSQ6 | F-box domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_8g185020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_12841, gene_12842, gene_21962, gene_21963, gene_21964 ... |