Basic Information
Locus ID:
gene_21715
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Auxin-induced protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 33985402 | 33988081 | - | gene_21715 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 64,020.02 Da | 57.17 | 80.22 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02519 | Auxin responsive protein | 13 | 94 | 1.5E-24 | IPR003676 |
| Pfam | PF00646 | F-box domain | 145 | 180 | 2.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 143 | 182 | 6.93E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 125 | 182 | 1.4E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 142 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21210.1 | SAUR-like auxin-responsive protein family . Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers. | 0 |
| RefSeq | XP_048492749.1 | auxin-responsive protein SAUR21-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FJF9 | Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9CX18 | Auxin-induced protein 15A-like OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_21714, gene_21715, gene_21720, gene_26506, gene_2829 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000042942 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000005l.131 |