Basic Information
Locus ID:
gene_21686
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 33512421 | 33519249 | - | gene_21686 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 132,057.31 Da | 33.35 | 90.45 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 2 | 278 | 1.43812E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 82 | 8.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 159 | 192 | 7.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 202 | 237 | 3.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 87 | 124 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 6 | 40 | 7.6E-5 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 776 | 1178 | 2.1E-169 | IPR010714 |
| Pfam | PF04053 | Coatomer WD associated region | 304 | 729 | 1.1E-131 | IPR006692 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 276 | 3.4E-65 | IPR036322 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 198 | 509 | 1.41E-14 | IPR011048 |
| Gene3D | G3DSA:1.25.40.470 | - | 601 | 773 | 8.7E-64 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 280 | 2.3E-110 | IPR015943 |
| SMART | SM00320 | WD40_4 | 43 | 82 | 3.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 40 | 9.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 278 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 237 | 9.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 193 | 5.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 85 | 124 | 7.0E-11 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1174 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 202 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 246 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 92 | 125 | 12.631039 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 8 | 40 | 10.337415 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 50 | 91 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 8 | 49 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 161 | 195 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 50 | 82 | 10.732868 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 205 | 238 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 92 | 133 | 15.454345 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 111 | 125 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 69 | 83 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 224 | 238 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 111 | 125 | 2.2E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_012067197.1 | coatomer subunit alpha-1 [Jatropha curcas] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A834G8B8 | Coatomer subunit alpha OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim11G0182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology