Basic Information
Locus ID:
gene_2168
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 8159402 | 8176523 | - | gene_2168 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 141,644.94 Da | 57.55 | 72.40 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 824 | 880 | 8.52937E-29 | - |
| Pfam | PF01426 | BAH domain | 561 | 673 | 7.9E-9 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 826 | 879 | 5.9E-10 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 886 | 1247 | 5.1E-38 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 812 | 879 | 1.74E-11 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 715 | 1247 | 7.92E-80 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1043 | 1213 | 9.5E-243 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 494 | 659 | 1.3E-45 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 717 | 1264 | 9.5E-243 | - |
| SMART | SM00298 | chromo_7 | 824 | 883 | 7.1E-8 | IPR000953 |
| SMART | SM00439 | BAH_4 | 558 | 674 | 1.1E-21 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 893 | 1244 | 1.0E-31 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 715 | 1254 | 47.726212 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 825 | 878 | 11.978301 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 558 | 674 | 17.968307 | IPR001025 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1229 | 1247 | - | IPR031303 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 895 | 907 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 938 | 952 | 9.2E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 716 | 732 | 9.2E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 984 | 997 | 9.2E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 800 | 819 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 798 | 819 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 326 | - | - |
| Coils | Coil | Coil | 470 | 493 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021851715.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Spinacia oleracea] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RVU1 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_028590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology