Basic Information
Locus ID:
gene_21611
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 32572181 | 32581073 | - | gene_21611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 94,819.88 Da | 57.55 | 69.18 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 62 | 178 | 3.28095E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 450 | 512 | 1.1E-13 | IPR002867 |
| Pfam | PF13847 | Methyltransferase domain | 58 | 178 | 1.5E-16 | IPR025714 |
| SUPERFAMILY | SSF57850 | RING/U-box | 450 | 518 | 3.18E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 373 | 462 | 1.21E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 520 | 581 | 1.41E-12 | - |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 26 | 211 | 1.25E-27 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 21 | 228 | 4.1E-61 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 372 | 463 | 3.3E-18 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 508 | 747 | 1.0E-57 | - |
| SMART | SM00647 | ibrneu5 | 520 | 577 | 0.039 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 450 | 512 | 2.1E-19 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 379 | 427 | 10.084539 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 375 | 581 | 38.951767 | IPR044066 |
| Coils | Coil | Coil | 677 | 704 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16090.2 | - | 0 |
| RefSeq | XP_021738548.1 | probable E3 ubiquitin-protein ligase ARI2 isoform X2 [Chenopodium quinoa] | 0 |
| Q84RR2 | Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana OX=3702 GN=ARI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A1V3D0 | RBR-type E3 ubiquitin transferase OS=Morella rubra OX=262757 GN=CJ030_MR7G011543 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1026 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_21611, gene_21613, gene_21614 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010306 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g218050 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg45826 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20185 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022406 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00016, Sgl02376, Sgl05084, Sgl07505 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018703, gene:ENSEOMG00000037783 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.4AG0009850, CQ.Regalona.r1.7BG0008160 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30113740 |
| Apiaceae | Apium graveolens | 1 | Ag9G00119 |
| Arecaceae | Cocos nucifera | 1 | scaffold025950G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723941 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2253.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G07064 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026003m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g003950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0041 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0047 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g03410 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0194s00010.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.90 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035659 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17218, Lb3G17225 |
| Poaceae | Echinochloa crus-galli | 4 | AH04.1633, AH07.1863, BH04.1646, CH04.1879 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0685390, gene-QOZ80_9BG0711520 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0125940.1, HORVU.MOREX.r3.7HG0703680.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_038626, gene-QYE76_059193, gene-QYE76_066570 |
| Poaceae | Oryza coarctata | 2 | Oco21G007300, Oco22G008430 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g35340.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G169700, gene-BS78_05G169900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103119, Pt_Chr0103125 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr31G006780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G335200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG021730, gene_TRIDC2BG026300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G171500.1, TraesCS2B02G197900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb201910_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44235 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18074 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.403, evm.TU.LG09.1645 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06500 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2164 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5974 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16917 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3376 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.173 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016774 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4734 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14088 |
| Salicaceae | Populus euphratica | 1 | populus_peu08916 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599137 |
| Solanaceae | Solanum chilense | 1 | SOLCI003002300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002689, gene-LOC114078438 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7809 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0525 |
| Zosteraceae | Zostera marina | 1 | Zosma06g06980.v3.1 |