Basic Information
Locus ID:
gene_21574
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
CDPK-related kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 32159615 | 32165582 | - | gene_21574 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 67,164.43 Da | 45.16 | 83.57 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 145 | 406 | 8.52353E-133 | - |
| Pfam | PF00069 | Protein kinase domain | 145 | 407 | 3.3E-70 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 435 | 589 | 7.92E-17 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 141 | 435 | 1.34E-83 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 425 | 516 | 1.3E-18 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 147 | 234 | 4.4E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 432 | 586 | 1.3E-18 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 235 | 418 | 2.4E-62 | - |
| SMART | SM00220 | serkin_6 | 145 | 407 | 2.6E-100 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 145 | 407 | 50.746021 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 449 | 484 | 8.515894 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 269 | 281 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 151 | 177 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50530.1 | CDPK-related kinase. CDPK-related kinase | 0 |
| RefSeq | XP_026400766.1 | CDPK-related kinase 5-like [Papaver somniferum] | 0 |
| Q9SCS2 | CDPK-related kinase 5 OS=Arabidopsis thaliana OX=3702 GN=CRK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ATF4 | Calcium/calmodulin-dependent protein kinase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology