Basic Information
Locus ID:
gene_2154
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
SMT3 suppressor of mif two 3 homolog 2b
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 7793454 | 7796013 | - | gene_2154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 29,329.36 Da | 43.35 | 80.65 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 186 | 253 | 5.2E-8 | IPR022617 |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 23 | 83 | 1.3E-7 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 91 | 168 | 2.0E-7 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 8 | 86 | 4.36E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 186 | 260 | 1.85E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 4 | 89 | 7.6E-18 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 185 | 261 | 1.1E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 92 | 173 | 7.1E-10 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 97 | 165 | 8.720258 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021852062.1 | uncharacterized protein LOC110791611 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9REE3 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_075740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2153, gene_2154 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004369, Ah004371, Ah004372, Ah004373, Ah004402, Ah012689 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51245, Sgl56548 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000024781, gene:ENSEOMG00000025028 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0001770, CQ.Regalona.r1.5AG0001780 ... |