Basic Information
Locus ID:
gene_2153
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
small ubiquitin protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 7790680 | 7792278 | - | gene_2153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 28,447.61 Da | 43.30 | 76.49 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01763 | Ubl_SUMO_like | 33 | 67 | 3.96311E-9 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 76 | 158 | 1.74E-6 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 172 | 246 | 3.36E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 30 | 67 | 3.25E-6 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 85 | 164 | 1.5E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 25 | 70 | 3.6E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 173 | 250 | 1.5E-11 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 170 | 250 | 8.546054 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021754277.1 | uncharacterized protein LOC110719610 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9S3K2 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_003160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2153, gene_2154 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004369, Ah004371, Ah004372, Ah004373, Ah004402, Ah012689 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51245, Sgl56548 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000024781, gene:ENSEOMG00000025028 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0001770, CQ.Regalona.r1.5AG0001780 ... |