halophFGD

Basic Information

Locus ID: gene_21454

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_5_Chr_4	30354004	30361384	-	gene_21454

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.58	67,997.25 Da	38.73	103.78	-0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13516	Leucine Rich repeat	177	198	0.03	IPR001611
Pfam	PF13516	Leucine Rich repeat	152	173	0.25	IPR001611
Pfam	PF13516	Leucine Rich repeat	203	224	1.1	IPR001611
SUPERFAMILY	SSF52047	RNI-like	276	558	3.14E-19	-
SUPERFAMILY	SSF52047	RNI-like	116	371	9.68E-27	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	52	263	2.8E-24	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	400	568	6.9E-18	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	265	399	5.2E-12	IPR032675
SMART	SM00367	LRR_CC_2	151	175	1.7	IPR006553
SMART	SM00367	LRR_CC_2	502	527	2.0	IPR006553
SMART	SM00367	LRR_CC_2	453	480	340.0	IPR006553
SMART	SM00367	LRR_CC_2	355	380	61.0	IPR006553
SMART	SM00367	LRR_CC_2	329	354	670.0	IPR006553
SMART	SM00367	LRR_CC_2	202	227	0.36	IPR006553
SMART	SM00367	LRR_CC_2	228	252	440.0	IPR006553
SMART	SM00367	LRR_CC_2	176	201	0.061	IPR006553

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03360 (F-box and leucine-rich repeat protein GRR1)

Pathway:

ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_010691043.1	F-box/LRR-repeat protein 14 [Beta vulgaris subsp. vulgaris]	0
TrEMBL	A0A0K9QEN5	F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_187630 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	19	gene_21430, gene_21431, gene_21432, gene_21433, gene_21436 ... gene_21437, gene_21453, gene_21454, gene_21456, gene_21457, gene_21459, gene_21460, gene_26246, gene_26247, gene_26248, gene_26251, gene_26255, gene_26256, gene_26257
Amaranthaceae	Atriplex hortensis	6	Ah010442, Ah010443, Ah010444, Ah010447, Ah010794, Ah024164
Amaranthaceae	Beta vulgaris	3	BVRB_7g160670, BVRB_9g218820, BVRB_9g218830
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24776, Sbi_jg8641
Amaranthaceae	Salicornia europaea	1	Seu_jg19963
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005111
Amaranthaceae	Suaeda glauca	3	Sgl56011, Sgl60655, Sgl61204
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000015098, gene:ENSEOMG00000019679 ... gene:ENSEOMG00000035959, gene:ENSEOMG00000049759, gene:ENSEOMG00000052680, gene:ENSEOMG00000053013
Amaranthaceae	Chenopodium quinoa	16	CQ.Regalona.r1.1AG0013100, CQ.Regalona.r1.1BG0012960 ... CQ.Regalona.r1.7BG0009310, CQ.Regalona.r1.7BG0009320, CQ.Regalona.r1.7BG0009330, CQ.Regalona.r1.7BG0009340, CQ.Regalona.r1.7BG0009360, CQ.Regalona.r1.7BG0009670, CQ.Regalona.r1.7BG0011330, CQ.Regalona.r1.9AG0008630, CQ.Regalona.r1.9AG0009240, CQ.Regalona.r1.9AG0015160, CQ.Regalona.r1.9AG0015230, CQ.Regalona.r1.9AG0015240, CQ.Regalona.r1.9AG0015250, CQ.Regalona.r1.9BG0013090
Apiaceae	Apium graveolens	1	Ag4G00092
Asteraceae	Flaveria trinervia	1	Ftri1G24598
Brassicaceae	Arabidopsis thaliana	1	AT1G80630.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10018340m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g35130.v2.2
Brassicaceae	Brassica nigra	1	BniB06g068330.2N
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.792
Portulacaceae	Portulaca oleracea	4	evm.TU.LG08.980, evm.TU.LG08.981, evm.TU.LG22.91 ... evm.TU.LG22.92
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.57916.3, evm.TU.57917.3
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-6695
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-16976
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12271, nbisL1-mrna-12272
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-17128
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-20704
Salicaceae	Populus euphratica	1	populus_peu34905
Solanaceae	Lycium barbarum	4	gene-LOC132631481, gene-LOC132631483, gene-LOC132633051 ... gene-LOC132634305
Solanaceae	Solanum chilense	1	SOLCI003651800
Solanaceae	Solanum pennellii	1	gene-LOC107013683
Tamaricaceae	Reaumuria soongarica	2	STRG.19304_chr07_+, STRG.19306_chr07_-
Tamaricaceae	Tamarix chinensis	2	TC08G2295, TC08G2298