Basic Information
Locus ID:
gene_21431
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 29945774 | 29949823 | - | gene_21431 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 78,228.16 Da | 44.65 | 98.98 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 463 | 594 | 1.07006E-26 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 465 | 636 | 1.6E-25 | IPR004274 |
| SUPERFAMILY | SSF52047 | RNI-like | 23 | 202 | 3.66E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 457 | 612 | 2.07E-27 | IPR036412 |
| SUPERFAMILY | SSF52047 | RNI-like | 233 | 386 | 1.02E-17 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 446 | 662 | 2.1E-47 | IPR023214 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 10 | 208 | 2.3E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 220 | 387 | 3.9E-20 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 142 | 167 | 310.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 27 | 52 | 480.0 | IPR006553 |
| SMART | SM00577 | forpap2 | 462 | 613 | 1.9E-34 | IPR004274 |
| SMART | SM00367 | LRR_CC_2 | 317 | 342 | 0.045 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 168 | 193 | 130.0 | IPR006553 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 459 | 632 | 28.57683 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 695 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20320.1 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein. | 0 |
| RefSeq | XP_010691810.2 | RNA polymerase II C-terminal domain phosphatase-like 4 [Beta vulgaris subsp. vulgaris] | 0 |
| F4JCB2 | RNA polymerase II C-terminal domain phosphatase-like 5 OS=Arabidopsis thaliana OX=3702 GN=CPL5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A484K2X6 | protein-serine/threonine phosphatase OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS1596 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 19 | gene_21430, gene_21431, gene_21432, gene_21433, gene_21436 ... |
| Amaranthaceae | Atriplex hortensis | 6 | Ah010442, Ah010443, Ah010444, Ah010447, Ah010794, Ah024164 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_7g160670, BVRB_9g218820, BVRB_9g218830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24776, Sbi_jg8641 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19963 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005111 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56011, Sgl60655, Sgl61204 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000015098, gene:ENSEOMG00000019679 ... |
| Amaranthaceae | Chenopodium quinoa | 16 | CQ.Regalona.r1.1AG0013100, CQ.Regalona.r1.1BG0012960 ... |
| Apiaceae | Apium graveolens | 1 | Ag4G00092 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G24598 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G80630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018340m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g068330.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.792 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.980, evm.TU.LG08.981, evm.TU.LG22.91 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.57916.3, evm.TU.57917.3 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6695 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16976 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12271, nbisL1-mrna-12272 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17128 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20704 |
| Salicaceae | Populus euphratica | 1 | populus_peu34905 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132631481, gene-LOC132631483, gene-LOC132633051 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI003651800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013683 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19304_chr07_+, STRG.19306_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2295, TC08G2298 |