Basic Information
Locus ID:
gene_21402
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 29445118 | 29471905 | - | gene_21402 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 134,088.14 Da | 45.41 | 78.50 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 426 | 628 | 3.82376E-103 | - |
| CDD | cd18794 | SF2_C_RecQ | 629 | 761 | 1.49168E-71 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 645 | 751 | 9.9E-18 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 1012 | 1080 | 3.6E-15 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 440 | 608 | 2.5E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 763 | 844 | 7.7E-17 | IPR032284 |
| Pfam | PF09382 | RQC domain | 852 | 968 | 4.5E-23 | IPR018982 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 397 | 770 | 3.19E-41 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 627 | 895 | 1.31E-57 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1011 | 1089 | 5.67E-14 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 402 | 628 | 7.3E-92 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 848 | 971 | 4.6E-20 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 629 | 847 | 3.7E-66 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1005 | 1096 | 3.2E-22 | IPR044876 |
| SMART | SM00956 | RQC_2 | 854 | 965 | 4.6E-29 | IPR018982 |
| SMART | SM00490 | helicmild6 | 671 | 752 | 8.3E-28 | IPR001650 |
| SMART | SM00487 | ultradead3 | 434 | 637 | 1.4E-28 | IPR014001 |
| SMART | SM00341 | hrdc7 | 1008 | 1090 | 2.4E-8 | IPR002121 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 430 | 905 | 4.2E-165 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1008 | 1090 | 17.849771 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 446 | 621 | 20.814131 | IPR014001 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 661 | 703 | 9.860222 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 646 | 807 | 19.307529 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 560 | 569 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 984 | 1004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1115 | - | - |
| Coils | Coil | Coil | 307 | 327 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_010691128.1 | ATP-dependent DNA helicase Q-like 4A [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R0B5 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_127980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology