Basic Information
Locus ID:
gene_21401
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 29445118 | 29456627 | - | gene_21401 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 120,178.23 Da | 39.30 | 82.81 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 877 | 911 | 0.003 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 451 | 485 | 0.033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 515 | 765 | 4.88E-13 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 410 | 1003 | 4.76E-47 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 939 | 1057 | 4.03E-5 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 511 | 776 | 1.5E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 777 | 1016 | 2.1E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 314 | 506 | 1.4E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 488 | 529 | 0.037 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 6.4E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 829 | 869 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 438 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 964 | 1005 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 532 | 575 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 618 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 872 | 911 | 3.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 621 | 662 | 350.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 6.4E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 789 | 826 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 444 | 485 | 0.0071 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 879 | 911 | 9.493783 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 879 | 920 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 451 | 494 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.432728 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.668314 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 472 | 486 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1059 | 1091 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1073 | 1091 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_028062897.1 | topless-related protein 4-like isoform X1 [Camellia sinensis] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4S4EQZ5 | Topless-related protein 4 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017481 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology