Basic Information
Locus ID:
gene_2130
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 6585981 | 6677923 | + | gene_2130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 101,955.02 Da | 40.36 | 88.91 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 42 | 279 | 7.61817E-146 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 320 | 412 | 1.4E-18 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 100 | 315 | 8.1E-57 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 574 | 750 | 3.2E-44 | IPR011682 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 31 | 318 | 1.19E-91 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 319 | 413 | 8.83E-27 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 421 | 901 | 4.24E-120 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1360 | - | 837 | 906 | 1.4E-11 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 42 | 101 | 7.3E-23 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 544 | 798 | 5.8E-86 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 284 | 362 | 2.3E-32 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 425 | 536 | 1.8E-26 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 102 | 283 | 2.3E-69 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 363 | 418 | 2.2E-19 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 320 | 394 | 1.4E-17 | IPR015341 |
| Coils | Coil | Coil | 840 | 860 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_034706987.1 | alpha-mannosidase At3g26720-like [Vitis riparia] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3JX81 | Alpha-mannosidase OS=Corchorus olitorius OX=93759 GN=COLO4_13373 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology