Basic Information
Locus ID:
gene_21265
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 26913453 | 26926354 | - | gene_21265 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 58,027.15 Da | 51.03 | 70.32 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 237 | 273 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 49 | 518 | 2.14E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 86 | 524 | 2.2E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 115 | 155 | 8.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 439 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 273 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 41 | 76 | 4.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 381 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 324 | 34.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 24 | 526 | 3.7E-198 | IPR000009 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 243 | 257 | - | IPR018067 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 115 | 129 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 273 | 300 | 2.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 102 | 130 | 2.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 386 | 411 | 2.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 412 | 438 | 2.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 245 | 272 | 2.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 131 | 159 | 2.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 358 | 385 | 2.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 495 | 524 | 2.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 301 | 329 | 2.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 330 | 357 | 2.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 55 | 75 | 2.7E-160 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| Coils | Coil | Coil | 524 | 526 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_010690054.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q39247 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CMR3 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology