Basic Information
Locus ID:
gene_21223
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Gpi-anchor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 26221850 | 26239319 | - | gene_21223 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 90,185.45 Da | 41.58 | 75.57 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 563 | 592 | 7.2E-5 | IPR001680 |
| Pfam | PF01650 | Peptidase C13 family | 44 | 281 | 3.7E-45 | IPR001096 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 438 | 528 | 3.2E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 429 | 791 | 1.95E-47 | IPR036322 |
| Gene3D | G3DSA:3.40.50.1460 | - | 41 | 320 | 1.2E-101 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 422 | 788 | 5.4E-135 | IPR015943 |
| SMART | SM00320 | WD40_4 | 508 | 547 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 421 | 459 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 743 | 787 | 370.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 464 | 503 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 614 | 653 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 553 | 593 | 3.1E-5 | IPR001680 |
| PIRSF | PIRSF019663 | Legumain | 3 | 256 | 2.7E-39 | IPR001096 |
| PIRSF | PIRSF500138 | GPI8 | 4 | 378 | 9.1E-148 | IPR028361 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 471 | 512 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 561 | 593 | 10.007177 | IPR001680 |
| PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 146 | 165 | 3.4E-35 | IPR001096 |
| PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 45 | 69 | 3.4E-35 | IPR001096 |
| PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 195 | 211 | 3.4E-35 | IPR001096 |
| PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 70 | 99 | 3.4E-35 | IPR001096 |
| PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 119 | 134 | 3.4E-35 | IPR001096 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 355 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08750.1 | Peptidase C13 family. | 0 |
| RefSeq | XP_021767404.1 | putative GPI-anchor transamidase [Chenopodium quinoa] | 0 |
| O80856 | Actin-related protein 2/3 complex subunit 1A OS=Arabidopsis thaliana OX=3702 GN=ARPC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S0S4Y2 | GPI-anchor transamidase OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A036592 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19268 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21223 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah011595, Ah011598 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg32257 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24901 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009514 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80361, Sgl82823 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016216, gene:ENSEOMG00000036695 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0010250, CQ.Regalona.r1.9BG0012120 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30183850 |
| Apiaceae | Apium graveolens | 2 | Ag4G00563, Ag4G00564 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G000790, COCNU_03G015330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709585 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1034.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G10340 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G08750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007907m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g07390.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g004420.2N, BniB03g002920.2N, BniB04g030990.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq04G0753, Ceq04G0772, Ceq04G0774, Ceq04G0775 |
| Casuarinaceae | Casuarina glauca | 6 | Cgl04G0863, Cgl04G0865, Cgl04G0883, Cgl04G0884, Cgl04G0885 ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g02610 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1170s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g33560 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2223 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004652 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.996, CH07.747 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0106480, gene-QOZ80_2BG0160000 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0013000.1, HORVU.MOREX.r3.6HG0579780.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_021645, gene-QYE76_021646, gene-QYE76_042885 |
| Poaceae | Oryza coarctata | 2 | Oco03G005710, Oco04G005930 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g12740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G089000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201997 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G032560, Chr15G023980 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G124700, Tel6E01G366100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG008140, gene_TRIDC1BG010300 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G060100.1, TraesCS1B02G078600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb205610_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34322 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15471 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG10.468, evm.TU.LG10.473, evm.TU.LG17.466 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g23650 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.299 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7864 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5838 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5358 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.204 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010921 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7757 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-274 |
| Salicaceae | Populus euphratica | 1 | populus_peu19580 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629806 |
| Solanaceae | Solanum chilense | 1 | SOLCI003222100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002824 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5287_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1888 |
| Zosteraceae | Zostera marina | 1 | Zosma06g03130.v3.1 |