Basic Information
Locus ID:
gene_21208
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 26005645 | 26011937 | - | gene_21208 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 92,867.58 Da | 62.38 | 67.48 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 770 | 808 | 1.12744E-17 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 768 | 814 | 3.3E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 769 | 815 | 1.5E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 748 | 821 | 5.3E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 770 | 809 | 10.674659 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 122 | - | - |
| Coils | Coil | Coil | 698 | 725 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_021732900.1 | uncharacterized protein LOC110699684 [Chenopodium quinoa] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9F993 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology