Basic Information
Locus ID:
gene_21191
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 25672482 | 25684271 | - | gene_21191 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 75,985.11 Da | 43.51 | 80.21 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01433 | Ribosomal_L16_L10e | 493 | 618 | 2.75744E-43 | IPR016180 |
| CDD | cd14137 | STKc_GSK3 | 84 | 376 | 0.0 | IPR039192 |
| Pfam | PF00252 | Ribosomal protein L16p/L10e | 464 | 618 | 3.7E-35 | IPR016180 |
| Pfam | PF00069 | Protein kinase domain | 89 | 373 | 1.2E-63 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 88 | 400 | 1.13E-88 | IPR011009 |
| SUPERFAMILY | SSF54686 | Ribosomal protein L16p/L10e | 456 | 625 | 4.97E-74 | IPR036920 |
| Gene3D | G3DSA:3.90.1170.10 | Ribosomal protein L10e/L16 | 453 | 670 | 1.3E-116 | IPR036920 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 74 | 168 | 4.0E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 169 | 416 | 2.6E-81 | - |
| SMART | SM00220 | serkin_6 | 89 | 373 | 1.4E-89 | IPR000719 |
| TIGRFAM | TIGR00279 | uL16_euk_arch: ribosomal protein uL16 | 453 | 626 | 1.2E-75 | IPR001197 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 89 | 373 | 43.834492 | IPR000719 |
| ProSitePatterns | PS01257 | Ribosomal protein L10e signature. | 560 | 581 | - | IPR018255 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 95 | 119 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 210 | 222 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko04012 (ErbB signaling pathway)
map04012 (ErbB signaling pathway)
ko04062 (Chemokine signaling pathway)
map04062 (Chemokine signaling pathway)
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04550 (Signaling pathways regulating pluripotency of stem cells)
map04550 (Signaling pathways regulating pluripotency of stem cells)
map04657 (IL-17 signaling pathway)
map04660 (T cell receptor signaling pathway)
map04662 (B cell receptor signaling pathway)
ko04711 (Circadian rhythm - fly)
map04711 (Circadian rhythm - fly)
ko04916 (Melanogenesis)
map04916 (Melanogenesis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30980.1 | SHAGGY-related protein kinase dZeta. Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts. | 0 |
| RefSeq | XP_010689734.2 | shaggy-related protein kinase eta isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q39010 | Shaggy-related protein kinase zeta OS=Arabidopsis thaliana OX=3702 GN=ASK6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0J8BPP6 | non-specific serine/threonine protein kinase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_9g209060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 7 | jg24978, jg3087, jg31479, jg33138, jg35704, jg4071, jg8419 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21191, gene_5244 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah031383, Ah035994 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g157900, BVRB_7g157910 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg20475, Sbi_jg2257, Sbi_jg23295, Sbi_jg34244 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg17090, Seu_jg2498 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005983, GOSA_00014184 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl20749, Sgl24808, Sgl26131, Sgl29956, Sgl71003, Sgl74595 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000008125, gene:ENSEOMG00000019396 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022530, CQ.Regalona.r1.1BG0001700 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30131770, pistato.v30178280 |
| Apiaceae | Apium graveolens | 2 | Ag2G01238, Ag3G01866 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702162, gene-LOC103722181 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.579.V1.1, AsparagusV1_08.3322.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri10G12676, Ftri11G29204, Ftri12G05425, Ftri9G20966 ... |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G14320.1, AT1G26910.1, AT1G66580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008763m.g.v1.0, Thhalv10019112m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g12670.v2.2, Sp1g21870.v2.2, Sp5g24860.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g009370.2N, BniB03g005950.2N, BniB03g041220.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2470 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2716 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g11800, gene.Cymno05g12890 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0318s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g36800, gene.Thate05g04400, gene.Thate07g00540 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3206, nbisL1-mrna-4138 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1654 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00024824, Pov_00024826, Pov_00029216, Pov_00036719 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04520, Lb2G15317 |
| Poaceae | Echinochloa crus-galli | 12 | AH01.3750, AH05.1094, AH05.1108, AH07.971, BH01.4097 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0027850, gene-QOZ80_1BG0078020 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0026070.1, HORVU.MOREX.r3.4HG0345200.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009812, gene-QYE76_064275 |
| Poaceae | Oryza coarctata | 5 | Oco05G012730, Oco09G003260, Oco10G003220, Oco15G003360 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os05g07700.1, LOC_Os11g11390.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G163100, gene-BS78_01G364700 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0306526, Pt_Chr0501700, Pt_Chr0501745 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G007860, Chr02G013350, Chr03G012990, Chr04G010580 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G209500, Tel2E01G1012100, Tel4E01G174000 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG014450, gene_TRIDC1BG019620 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G112500.1, TraesCS1B02G132700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb049570_P004, Zm00001eb150930_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-15804, nbis-gene-3377, nbis-gene-51722 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g3034, Zma_g3693, Zma_g726, Zma_g8392 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG03.873, evm.TU.LG07.384, evm.TU.LG07.481 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g27450, gene.Posoc01g27460, gene.Posoc01g27470 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.42613.1, evm.TU.Scaffold_16_RagTag.702 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14004, nbisL1-mrna-24873 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3352, nbisL1-mrna-3353 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19107, nbisL1-mrna-19108 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000022l.63, evm.TU.utg000022l.146 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016201 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-148, nbisL1-mrna-149, nbisL1-mrna-23164 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10405, nbisL1-mrna-10406 |
| Salicaceae | Populus euphratica | 2 | populus_peu14521, populus_peu17033 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132602810, gene-LOC132605765, gene-LOC132605766 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI001735900, SOLCI002583300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107023517, gene-LOC107023542, gene-LOC107023544 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.6391_chr04_-, gene_1514, gene_17002 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2640, TC06G0834 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17340.v3.1 |