halophFGD

Basic Information

Locus ID: gene_21127

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_5_Chr_4	24669428	24672425	-	gene_21127

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.65	54,083.01 Da	44.56	102.95	0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	21	47	2.2E-4	IPR001810
Pfam	PF07723	Leucine Rich Repeat	180	204	4.6E-5	IPR013101
SUPERFAMILY	SSF81383	F-box domain	18	51	5.1E-8	IPR036047
SUPERFAMILY	SSF52047	RNI-like	55	362	9.42E-10	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	20	415	1.6E-8	IPR032675
ProSiteProfiles	PS50181	F-box domain profile.	19	71	8.702637	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G52680.1	F-box/RNI-like/FBD-like domains-containing protein.
RefSeq	XP_021740213.1	F-box/FBD/LRR-repeat protein At5g56420-like [Chenopodium quinoa]
Swiss-Prot	Q9LXJ6	F-box/FBD/LRR-repeat protein At3g52680 OS=Arabidopsis thaliana OX=3702 GN=At3g52680 PE=2 SV=2
TrEMBL	A0A803ME70	F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg3974
Aizoaceae	Mesembryanthemum crystallinum	34	gene_17174, gene_17440, gene_18204, gene_21078, gene_21079 ... gene_21123, gene_21124, gene_21126, gene_21127, gene_21128, gene_21129, gene_22186, gene_22187, gene_238, gene_239, gene_240, gene_24445, gene_25944, gene_25945, gene_25946, gene_25949, gene_25951, gene_25959, gene_25960, gene_25961, gene_262, gene_263, gene_397, gene_398, gene_400, gene_6464, gene_6465, gene_8234, gene_8235
Amaranthaceae	Atriplex hortensis	17	Ah006344, Ah008886, Ah008887, Ah008891, Ah011938, Ah013598 ... Ah017370, Ah017379, Ah017873, Ah017876, Ah023906, Ah023907, Ah023909, Ah023912, Ah023913, Ah023914, Ah023915
Amaranthaceae	Beta vulgaris	3	BVRB_6g135730, BVRB_6g148480, BVRB_8g181500
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg29308, Sbi_jg3544, Sbi_jg3545, Sbi_jg3546, Sbi_jg39262 ... Sbi_jg57477
Amaranthaceae	Salicornia europaea	3	Seu_jg11118, Seu_jg25165, Seu_jg6417
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00000871, GOSA_00002017, GOSA_00002023, GOSA_00002024 ... GOSA_00008556, GOSA_00023935
Amaranthaceae	Suaeda glauca	38	Sgl00177, Sgl03204, Sgl03216, Sgl05228, Sgl05235, Sgl08311 ... Sgl08619, Sgl11784, Sgl11941, Sgl35772, Sgl35773, Sgl35774, Sgl35778, Sgl35808, Sgl35810, Sgl35812, Sgl41085, Sgl41086, Sgl41087, Sgl41123, Sgl41125, Sgl45763, Sgl45803, Sgl50507, Sgl63236, Sgl63237, Sgl63238, Sgl63239, Sgl63372, Sgl63373, Sgl63374, Sgl63375, Sgl63376, Sgl63377, Sgl67848, Sgl67849, Sgl67850, Sgl78069
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000003161, gene:ENSEOMG00000003283 ... gene:ENSEOMG00000009829, gene:ENSEOMG00000012500, gene:ENSEOMG00000012551, gene:ENSEOMG00000014675, gene:ENSEOMG00000027282, gene:ENSEOMG00000030141, gene:ENSEOMG00000042580, gene:ENSEOMG00000046836, gene:ENSEOMG00000047041, gene:ENSEOMG00000048338, gene:ENSEOMG00000048657
Amaranthaceae	Chenopodium quinoa	15	CQ.Regalona.r1.1BG0014180, CQ.Regalona.r1.1BG0014190 ... CQ.Regalona.r1.1BG0014200, CQ.Regalona.r1.1BG0014210, CQ.Regalona.r1.4BG0024710, CQ.Regalona.r1.6AG0004980, CQ.Regalona.r1.6AG0004990, CQ.Regalona.r1.6AG0023810, CQ.Regalona.r1.6BG0005170, CQ.Regalona.r1.6BG0005180, CQ.Regalona.r1.6BG0005190, CQ.Regalona.r1.6BG0025140, CQ.Regalona.r1.8AG0004030, CQ.Regalona.r1.8BG0000770, CQ.Regalona.r1.8BG0004190
Apiaceae	Apium graveolens	1	Ag3G00260
Arecaceae	Cocos nucifera	1	COCNU_06G010190
Arecaceae	Phoenix dactylifera	2	gene-LOC103714491, gene-LOC103719351
Asteraceae	Flaveria trinervia	1	Ftri15G16068
Brassicaceae	Arabidopsis thaliana	10	AT1G49610.1, AT1G57690.1, AT3G03360.1, AT3G18150.1 ... AT3G28410.1, AT5G02700.1, AT5G02910.1, AT5G02920.1, AT5G02930.1, AT5G03100.1
Brassicaceae	Eutrema salsugineum	14	Thhalv10013441m.g.v1.0, Thhalv10014018m.g.v1.0 ... Thhalv10014041m.g.v1.0, Thhalv10015785m.g.v1.0, Thhalv10017536m.g.v1.0, Thhalv10021970m.g.v1.0, Thhalv10022165m.g.v1.0, Thhalv10022252m.g.v1.0, Thhalv10025165m.g.v1.0, Thhalv10026908m.g.v1.0, Thhalv10027265m.g.v1.0, Thhalv10027555m.g.v1.0, Thhalv10029332m.g.v1.0, Thhalv10029491m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g05870.v2.2, Sp6g39690.v2.2, SpUn0028_0070.v2.2
Brassicaceae	Brassica nigra	17	BniB01g045590.2N, BniB01g046270.2N, BniB01g046290.2N ... BniB02g040550.2N, BniB02g057230.2N, BniB02g057250.2N, BniB02g057330.2N, BniB02g057340.2N, BniB03g039070.2N, BniB04g019020.2N, BniB05g002970.2N, BniB05g002980.2N, BniB05g023310.2N, BniB08g000850.2N, BniB08g000920.2N, BniB08g025960.2N, BniB08g025970.2N
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g29060
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-986
Plantaginaceae	Plantago ovata	66	Pov_00000097, Pov_00000302, Pov_00001140, Pov_00001142 ... Pov_00002228, Pov_00002664, Pov_00003570, Pov_00004423, Pov_00006395, Pov_00006966, Pov_00006967, Pov_00007045, Pov_00014220, Pov_00018783, Pov_00018784, Pov_00018786, Pov_00018787, Pov_00019745, Pov_00019746, Pov_00019970, Pov_00019971, Pov_00019972, Pov_00019976, Pov_00020011, Pov_00020012, Pov_00020014, Pov_00020015, Pov_00020017, Pov_00020020, Pov_00020309, Pov_00022336, Pov_00022337, Pov_00022339, Pov_00022341, Pov_00022352, Pov_00022354, Pov_00022355, Pov_00022356, Pov_00022358, Pov_00022590, Pov_00022704, Pov_00023309, Pov_00025764, Pov_00025765, Pov_00026111, Pov_00028397, Pov_00028449, Pov_00029108, Pov_00030886, Pov_00031129, Pov_00032079, Pov_00032925, Pov_00038493, Pov_00038494, Pov_00038495, Pov_00038496, Pov_00038497, Pov_00038499, Pov_00039026, Pov_00039147, Pov_00039780, Pov_00040059, Pov_00040070, Pov_00040075, Pov_00041523, Pov_00041592
Plumbaginaceae	Limonium bicolor	1	Lb2G09011
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.1685, evm.TU.LG13.223, evm.TU.LG13.224 ... evm.TU.LG14.924
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_5_RagTag.1460, evm.TU.Scaffold_9_RagTag.1322 ... evm.TU.Scaffold_9_RagTag.1323, evm.TU.Scaffold_9_RagTag.1324
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-11955, nbisL1-mrna-20845, nbisL1-mrna-25001 ... nbisL1-mrna-25002, nbisL1-mrna-25003, nbisL1-mrna-25004, nbisL1-mrna-25005, nbisL1-mrna-25006, nbisL1-mrna-25009, nbisL1-mrna-25026
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-1141
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11028, nbisL1-mrna-21299
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000006l.839
Rhizophoraceae	Kandelia obovata	1	Maker00013954
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10367, nbisL1-mrna-1243
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-15416, nbisL1-mrna-24508, nbisL1-mrna-4758
Salicaceae	Populus euphratica	2	populus_peu01313, populus_peu16965
Solanaceae	Lycium barbarum	34	gene-LOC132606110, gene-LOC132606267, gene-LOC132606516 ... gene-LOC132609230, gene-LOC132609669, gene-LOC132609670, gene-LOC132609671, gene-LOC132609672, gene-LOC132609673, gene-LOC132609674, gene-LOC132616911, gene-LOC132618683, gene-LOC132621803, gene-LOC132622650, gene-LOC132622792, gene-LOC132623899, gene-LOC132624151, gene-LOC132624843, gene-LOC132624873, gene-LOC132624906, gene-LOC132626358, gene-LOC132627453, gene-LOC132627455, gene-LOC132627456, gene-LOC132627457, gene-LOC132627477, gene-LOC132627479, gene-LOC132627480, gene-LOC132627481, gene-LOC132631343, gene-LOC132635942, gene-LOC132644394, gene-LOC132645534, gene-LOC132645654
Solanaceae	Solanum chilense	19	SOLCI000110700, SOLCI000110800, SOLCI000323400 ... SOLCI001957500, SOLCI002521200, SOLCI002521600, SOLCI002711700, SOLCI003174600, SOLCI003664500, SOLCI003664700, SOLCI003664800, SOLCI004772500, SOLCI004943400, SOLCI005373500, SOLCI006481800, SOLCI006728100, SOLCI007137300, SOLCI007137400, SOLCI007296700
Solanaceae	Solanum pennellii	25	gene-LOC107004363, gene-LOC107006701, gene-LOC107008863 ... gene-LOC107009290, gene-LOC107009465, gene-LOC107010438, gene-LOC107015964, gene-LOC107017002, gene-LOC107017003, gene-LOC107017287, gene-LOC107017373, gene-LOC107020226, gene-LOC107023947, gene-LOC107026213, gene-LOC107026864, gene-LOC107026865, gene-LOC107026888, gene-LOC107027319, gene-LOC107027391, gene-LOC107027419, gene-LOC107027448, gene-LOC107027450, gene-LOC107027461, gene-LOC107028109, gene-LOC114075190
Tamaricaceae	Reaumuria soongarica	1	MSTRG.16278_chr09_-
Tamaricaceae	Tamarix chinensis	1	TC07G2267