Basic Information
Locus ID:
gene_21106
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ring finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 24375950 | 24377404 | - | gene_21106 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 14,801.97 Da | 69.09 | 98.27 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 79 | 121 | 1.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 73 | 123 | 7.61E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 124 | 2.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 80 | 120 | 4.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 80 | 121 | 11.943417 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039119373.1 | probable E3 ubiquitin-protein ligase ZFP1 isoform X4 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6XHK0 | probable E3 ubiquitin-protein ligase RHG1A OS=Coffea arabica OX=13443 GN=LOC113742032 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21106, gene_21107 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G30016, Ftri9G03016 |
| Plantaginaceae | Plantago ovata | 7 | Pov_00005098, Pov_00012293, Pov_00017219, Pov_00027224 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608268 |