Basic Information
Locus ID:
gene_20988
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box FBD LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 21572180 | 21574362 | - | gene_20988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 60,731.92 Da | 42.23 | 101.72 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 35 | 72 | 1.8E-7 | IPR001810 |
| Pfam | PF08387 | FBD | 453 | 494 | 2.3E-8 | IPR006566 |
| SUPERFAMILY | SSF52047 | RNI-like | 127 | 322 | 8.63E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 33 | 92 | 1.15E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 335 | 6.1E-8 | IPR032675 |
| SMART | SM00579 | 9598neu4hmm | 455 | 529 | 7.4E-7 | IPR006566 |
| SMART | SM00256 | fbox_2 | 39 | 80 | 3.1E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 33 | 81 | 10.34529 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03220.1 | Protein with RNI-like/FBD-like domains. | 0 |
| RefSeq | XP_006447441.1 | putative F-box/FBD/LRR-repeat protein At4g03220 [Citrus clementina] | 0 |
| Q9ZR09 | Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana OX=3702 GN=At4g03220 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2H5Q840 | F-box domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_204970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18961 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20988 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30018990 |
| Apiaceae | Apium graveolens | 1 | Ag3G00232 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC113463499 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G11991, Ftri13G21589 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009938m.g.v1.0, Thhalv10029130m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g055710.2N, BniB08g038980.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2490 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2585 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1992 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010082, Pov_00037775 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12478 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.763, evm.TU.LG20.1138 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g02340, gene.Posoc10g02360 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1321 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20846 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8750 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21298 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.811 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1244 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4759 |
| Salicaceae | Populus euphratica | 2 | populus_peu02891, populus_peu16959 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132619043 |
| Solanaceae | Solanum chilense | 1 | SOLCI002847700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025251 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14682 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2252 |