Basic Information
Locus ID:
gene_20888
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 18318339 | 18327382 | - | gene_20888 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 56,960.05 Da | 52.56 | 81.67 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 385 | 456 | 6.1E-12 | IPR002867 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 316 | 360 | 9.8E-6 | IPR018957 |
| Pfam | PF13456 | Reverse transcriptase-like | 169 | 236 | 2.3E-9 | IPR002156 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 395 | 2.22E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 471 | 503 | 3.39E-7 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 453 | 504 | 6.4E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 397 | 5.3E-13 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 383 | 456 | 3.7E-6 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 316 | 360 | 10.010774 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 312 | 504 | 20.849407 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 74 | - | - |
| Coils | Coil | Coil | 86 | 106 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60250.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_020420837.1 | uncharacterized protein LOC18775429 isoform X2 [Prunus persica] | 0 |
| F4ITM1 | E3 ubiquitin-protein ligase RSL1 OS=Arabidopsis thaliana OX=3702 GN=RSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251NMJ3 | Zinc finger protein OS=Prunus persica OX=3760 GN=PRUPE_6G094500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16644, jg16645 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20887, gene_20888 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl78662, Sgl78677, Sgl81141, Sgl81153 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015962, gene:ENSEOMG00000039759 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0005260, CQ.Regalona.r1.9BG0017040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30059140 |
| Apiaceae | Apium graveolens | 3 | Ag11G04273, Ag11G04274, Ag11G04275 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G002940 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702868 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.383.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri16G11156, Ftri16G28335, Ftri16G33256, Ftri2G26274 |
| Brassicaceae | Arabidopsis thaliana | 21 | AT2G19610.2, AT2G21420.1, AT2G22940.1, AT2G25360.1 ... |
| Brassicaceae | Eutrema salsugineum | 7 | Thhalv10000449m.g.v1.0, Thhalv10002469m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp4g04530.v2.2, Sp4g04580.v2.2, Sp4g06090.v2.2 ... |
| Brassicaceae | Brassica nigra | 16 | BniB01g017220.2N, BniB01g017230.2N, BniB01g040740.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq08G2422, Ceq08G2423, Ceq08G2424, Ceq08G2425 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G2503, Cgl08G2641, Cgl08G2642, Cgl08G2661 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g01670, gene.Thate01g01690 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG09.961, evm.TU.LG09.962 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00006793, Pov_00014691, Pov_00033936, Pov_00033939 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31815, Lb6G31819 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.994, AH06.339, BH02.1133, BH06.445, CH02.1168 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_5AG0378410, gene-QOZ80_5AG0378420 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0466340.1, HORVU.MOREX.r3.5HG0466420.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_003804, gene-QYE76_003806, gene-QYE76_003807 ... |
| Poaceae | Oryza coarctata | 4 | Ocoptg000043lG000030, Ocoptg000074lG000040 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g44720.1, LOC_Os11g01240.1, LOC_Os12g01230.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G000300, gene-BS78_10G051600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0705190, Pt_Chr0705191 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr04G023150, Chr04G023160, Chr06G024900, Chr06G024920 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G268400, Tel5E01G268500, Tel7E01G317000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG025830, gene_TRIDC5BG026960 |
| Poaceae | Triticum aestivum | 7 | TraesCS5A02G155400.1, TraesCS5A02G155500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb194870_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25859, nbis-gene-46275 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24580, Zma_g25551 |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG02.2352, evm.TU.LG02.2353, evm.TU.LG03.2251 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g02890 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.331, evm.TU.Scaffold_12_RagTag.332 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24464, nbisL1-mrna-30305 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19735, nbisL1-mrna-9410 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16120, nbisL1-mrna-19607 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.432, evm.TU.utg000027l.371 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015287, Maker00017822 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4352, nbisL1-mrna-5613 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11829, nbisL1-mrna-15059 |
| Salicaceae | Populus euphratica | 2 | populus_peu11475, populus_peu36784 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132600799, gene-LOC132605940, gene-LOC132605944 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI001155000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021552 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.4780_chr04_-, gene_101 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0004 |
| Zosteraceae | Zostera marina | 1 | Zosma06g21390.v3.1 |