Basic Information
Locus ID:
gene_20880
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 17942959 | 17944599 | - | gene_20880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 13,870.51 Da | 58.82 | 70.98 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 65 | 114 | 1.0E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 119 | 1.71E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 122 | 2.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 66 | 113 | 7.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 66 | 114 | 11.146755 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010653528.1 | PREDICTED: E3 ubiquitin-protein ligase RNF130-like [Vitis vinifera] | 0 |
| TrEMBL | A0A022PTB0 | RING-type domain-containing protein (Fragment) OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a024936mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_12849, gene_13764, gene_20880 |