Basic Information
Locus ID:
gene_20856
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 17119478 | 17128325 | - | gene_20856 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 53,921.54 Da | 61.62 | 87.28 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 244 | 292 | 2.06548E-13 | - |
| Pfam | PF12906 | RING-variant domain | 244 | 291 | 1.7E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 240 | 295 | 1.06E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 229 | 299 | 3.8E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 243 | 292 | 1.7E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 236 | 298 | 19.155493 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 235 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021745986.1 | uncharacterized protein LOC110711854 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A7C8ZBB7 | RING-CH-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology