Basic Information
Locus ID:
gene_20540
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 2074218 | 2096821 | - | gene_20540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 79,594.49 Da | 42.53 | 91.16 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06627 | STKc_Cdc7_like | 19 | 274 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 21 | 274 | 8.2E-73 | IPR000719 |
| SUPERFAMILY | SSF48371 | ARM repeat | 584 | 722 | 1.02E-17 | IPR016024 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 295 | 4.59E-92 | IPR011009 |
| Gene3D | G3DSA:1.25.10.10 | - | 584 | 725 | 6.3E-15 | IPR011989 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 17 | 305 | 1.3E-91 | - |
| SMART | SM00220 | serkin_6 | 20 | 274 | 1.5E-99 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 20 | 274 | 52.230091 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 26 | 49 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 140 | 152 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 200 | 222 | 2.6E-10 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 134 | 152 | 2.6E-10 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 243 | 265 | 2.6E-10 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 96 | 109 | 2.6E-10 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 516 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 358 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13530.1 | mitogen-activated protein kinase kinase kinase 7. MAP3K epsilon protein kinase 1 is functionally redundant with MAP3Ke2. Required for pollen development but not essential. map3ke1;map3ke2 double-mutant pollen grains develop plasma membrane irregularities following pollen mitosis I. Localized primarily in the plasma membrane. Expressed in leaf trichomes, root columella cells and developing ovules. | 0 |
| RefSeq | XP_048492311.1 | MAP3K epsilon protein kinase 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LJD8 | MAP3K epsilon protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=M3KE1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QDN5 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_196330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5040, jg5041, jg9698 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20539, gene_20540 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038480 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g203210, BVRB_9g203220 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg14227, Sbi_jg14653, Sbi_jg53497 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10151 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012551 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017951, gene:ENSEOMG00000039769 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0006910, CQ.Regalona.r1.9AG0001210 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30224700 |
| Apiaceae | Apium graveolens | 4 | Ag1G02139, Ag3G01840, Ag5G01792, AgUnG00778 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G008040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705698 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1659.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G17763, Ftri3G19894 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G07980.1, AT3G13530.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10019902m.g.v1.0, Thhalv10019926m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g06890.v2.2, Sp3g11740.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g051670.2N, BniB01g051690.2N, BniB03g023690.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0627 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0614, Cgl07G0623 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g09340 |
| Dunaliellaceae | Dunaliella salina | 10 | Dusal.0047s00002.v1.0, Dusal.0049s00031.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g14080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-9393, nbisL1-mrna-9394 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.942 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019389 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G34098, Lb7G34518 |
| Poaceae | Echinochloa crus-galli | 2 | AH09.2589, BH09.2813 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300770, gene-QOZ80_4BG0331480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0202060.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000054, gene-QYE76_046966 |
| Poaceae | Oryza coarctata | 2 | Oco07G018150, Oco08G017530 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G268900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0300488, Pt_Chr0300508, Pt_Chr0503147 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr23G001840, Chr25G001450, Chr26G017460, Chr30G000320 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G842500, Tel3E01G009200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG070140, gene_TRIDC2BG075830 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G498000.3, TraesCS2B02G526200.3 ... |
| Poaceae | Zea mays | 4 | Zm00001eb067530_P002, Zm00001eb134900_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6089 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20613, Zma_g22143 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.2308, evm.TU.LG08.34, evm.TU.LG13.1460 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g16660, gene.Posoc06g16670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.347 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26619 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-7677, nbisL1-mrna-9553 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17628, nbisL1-mrna-19993 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.211, evm.TU.utg000013l.358 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004377, Maker00004758 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10751, nbisL1-mrna-13991 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14379, nbisL1-mrna-2624 |
| Salicaceae | Populus euphratica | 4 | populus_peu13948, populus_peu13949, populus_peu23151 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632319 |
| Solanaceae | Solanum chilense | 1 | SOLCI002413500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004536 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4344 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1698 |
| Zosteraceae | Zostera marina | 3 | Zosma01g27110.v3.1, Zosma01g27120.v3.1, Zosma05g05310.v3.1 |