Basic Information
Locus ID:
gene_20494
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 714429 | 751795 | - | gene_20494 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 124,358.45 Da | 51.44 | 77.87 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 960 | 1064 | 2.75152E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 334 | 704 | 2.28812E-77 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 958 | 1055 | 2.2E-16 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 820 | 856 | 2.1E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 352 | 781 | 2.4E-64 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 712 | 1111 | 7.31E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 319 | 704 | 3.55E-43 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 817 | 859 | 2.16E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 308 | 397 | 3.0E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 810 | 870 | 1.5E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 571 | 718 | 2.4E-32 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 719 | 1112 | 4.7E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 468 | 559 | 4.7E-11 | IPR038718 |
| SMART | SM00490 | helicmild6 | 972 | 1055 | 1.9E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 330 | 681 | 4.6E-26 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 820 | 859 | 10.984472 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 486 | 666 | 11.376745 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 944 | 1108 | 14.601996 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 835 | 844 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 410 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_019107268.1 | helicase-like transcription factor CHR28 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUG1 | Helicase-like transcription factor CHR28 OS=Spinacia oleracea OX=3562 GN=SOVF_139950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology