Basic Information
Locus ID:
gene_20443
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 35254590 | 35274744 | + | gene_20443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.27 | 109,158.86 Da | 38.81 | 94.90 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 662 | 928 | 1.4134E-89 | - |
| Pfam | PF13855 | Leucine rich repeat | 332 | 366 | 3.7E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 187 | 247 | 2.5E-8 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 659 | 925 | 2.9E-47 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 66 | 105 | 3.9E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 95 | 428 | 1.12E-56 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 642 | 958 | 4.53E-78 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 329 | 453 | 3.6E-12 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 732 | 938 | 3.5E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 626 | 731 | 8.4E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 221 | 328 | 2.1E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 65 | 220 | 9.5E-43 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 353 | 377 | 7.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 210 | 234 | 100.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 656 | 929 | 6.4E-39 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 138 | 162 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 258 | 282 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 209 | 36.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 656 | 929 | 38.293964 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 662 | 684 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 776 | 788 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01950.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021865966.1 | probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X1 [Spinacia oleracea] | 0 |
| C0LGD7 | Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana OX=3702 GN=At1g06840 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R8K6 | Protein kinase domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_094150 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology