Basic Information
Locus ID:
gene_204
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 23048223 | 23049487 | - | gene_204 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.17 | 17,543.52 Da | 29.84 | 89.19 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 11 | 73 | 2.16986E-14 | IPR002048 |
| CDD | cd00051 | EFh | 86 | 144 | 3.43771E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 10 | 72 | 1.3E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 85 | 145 | 3.6E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 5 | 147 | 2.62E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 103 | 1.4E-29 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 104 | 155 | 9.7E-15 | - |
| SMART | SM00054 | efh_1 | 122 | 150 | 1.0E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 11 | 39 | 0.0098 | IPR002048 |
| SMART | SM00054 | efh_1 | 86 | 114 | 5.7E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 47 | 75 | 0.044 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 82 | 117 | 14.569197 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 118 | 153 | 13.843916 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 43 | 78 | 11.165957 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 7 | 42 | 14.150764 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 20 | 32 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 131 | 143 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 56 | 68 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 95 | 107 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_031273673.1 | probable calcium-binding protein CML15 [Pistacia vera] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2MSW9 | Calcium-binding protein CML16 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS415876 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology