Basic Information
Locus ID:
gene_2035
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
serine threonine-protein kinase cdc7
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 5555962 | 5565268 | - | gene_2035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 112,995.38 Da | 45.59 | 77.00 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 819 | 955 | 1.9E-18 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 489 | 640 | 3.1E-24 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 485 | 965 | 7.14E-57 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 564 | 642 | 3.3E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 792 | 995 | 7.3E-31 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 488 | 563 | 3.3E-26 | - |
| SMART | SM00220 | serkin_6 | 488 | 955 | 4.1E-50 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 488 | 955 | 32.866512 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 600 | 612 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 965 | 1008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 728 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 733 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16970.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_010677130.2 | uncharacterized protein LOC104892819 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| O00311 | Cell division cycle 7-related protein kinase OS=Homo sapiens OX=9606 GN=CDC7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LUG0 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4911 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2035 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004112 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105160 |
| Amaranthaceae | Salicornia bigelovii | 8 | Sbi_jg38973, Sbi_jg38974, Sbi_jg38980, Sbi_jg38983 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10844, Seu_jg11932 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010824 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51157, Sgl56461 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004661 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0004130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30141930 |
| Apiaceae | Apium graveolens | 1 | Ag7G00179 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G004860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710813 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3178.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G15921 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G16970.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024346m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g17210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g019340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0006 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0010, Cgl03G0016 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g04190 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g05240 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1129 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004126 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08589 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2882, BH01.3224, CH01.3452 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116910, gene-QOZ80_2BG0170630 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0057620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009958, gene-QYE76_012693 |
| Poaceae | Oryza coarctata | 2 | Oco19G010360, Oco20G010180 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G283300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503224, Pt_Chr0503269 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G005220, Chr13G019640, Chr15G018860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G368600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG032820, gene_TRIDC1BG038100 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G217400.1, TraesCS1B02G230600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb023800_P001, Zm00001eb391030_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12926 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.843, evm.TU.LG17.840 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g09540, gene.Posoc05g10880, gene.Posoc09g09320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.412 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17958 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-8315, nbisL1-mrna-8316 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.126 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018437 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16178 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10679 |
| Salicaceae | Populus euphratica | 2 | populus_peu03062, populus_peu33941 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635174 |
| Solanaceae | Solanum chilense | 1 | SOLCI006593700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026764 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14891 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2782 |
| Zosteraceae | Zostera marina | 1 | Zosma01g35870.v3.1 |