Basic Information
Locus ID:
gene_20022
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 20351402 | 20372568 | + | gene_20022 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 93,034.25 Da | 45.50 | 77.75 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 434 | 483 | 1.7E-13 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 239 | 294 | 3.8E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 500 | 541 | 8.7E-8 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 732 | 821 | 1.16E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 570 | 628 | 6.2E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 495 | 543 | 1.25E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 489 | 566 | 1.1E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 721 | 827 | 1.3E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 570 | 633 | 3.8E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 500 | 541 | 3.7E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 574 | 631 | 0.0016 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 572 | 633 | 8.5021 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 681 | 841 | 9.586373 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 498 | 543 | 10.442299 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 501 | 540 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 400 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_010684186.1 | uncharacterized protein LOC104898779 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9B102 | PHD-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology