Basic Information
Locus ID:
gene_19993
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 19127388 | 19131095 | + | gene_19993 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 101,221.40 Da | 42.18 | 66.43 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 282 | 368 | 3.22458E-30 | - |
| Pfam | PF00855 | PWWP domain | 284 | 368 | 4.9E-16 | IPR000313 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 819 | 907 | 3.98E-7 | IPR035979 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 277 | 388 | 6.62E-27 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 272 | 375 | 2.6E-23 | - |
| SMART | SM00293 | PWWP_4 | 282 | 343 | 1.1E-8 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 284 | 345 | 14.23562 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 720 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 824 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 600 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 529 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021865134.1 | uncharacterized protein LOC110803906 [Spinacia oleracea] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RXW3 | PWWP domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_016280 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology