Basic Information
Locus ID:
gene_19988
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 17716529 | 17730378 | + | gene_19988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 72,314.77 Da | 36.94 | 86.03 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 29 | 118 | 1.75266E-18 | - |
| CDD | cd04476 | RPA1_DBD_C | 219 | 370 | 2.1188E-34 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 238 | 359 | 2.3E-16 | IPR013955 |
| Pfam | PF02721 | Domain of unknown function DUF223 | 54 | 143 | 2.3E-4 | IPR003871 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 214 | 369 | 2.4E-26 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 15 | 126 | 5.57E-13 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 14 | 120 | 1.3E-15 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 550 | 617 | 4.7E-5 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 201 | 386 | 1.3E-35 | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021733164.1 | replication protein A 70 kDa DNA-binding subunit E-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A484MJB6 | Rep_fac-A_C domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS30827 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology