Basic Information
Locus ID:
gene_19977
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Double-stranded RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 16853276 | 16856374 | + | gene_19977 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 27,330.71 Da | 50.80 | 66.71 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 2 | 66 | 5.8E-10 | IPR014720 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 90 | 153 | 5.0E-9 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 84 | 153 | 1.23E-15 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 2 | 68 | 1.19E-17 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 1 | 68 | 2.0E-21 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 82 | 153 | 1.4E-16 | - |
| SMART | SM00358 | DRBM_3 | 2 | 69 | 4.7E-11 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 88 | 154 | 8.1E-10 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 87 | 155 | 10.411697 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 1 | 70 | 11.479855 | IPR014720 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41070.1 | dsRNA-binding protein 5. Encodes a double-stranded RNA binding protein. | 0 |
| RefSeq | XP_021735126.1 | double-stranded RNA-binding protein 4-like [Chenopodium quinoa] | 0 |
| Q6YW64 | Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RM30 | DRBM domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_051130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19588, jg31617 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16651, gene_19977 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035579 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_1g009890, BVRB_2g027800, BVRB_9g203590 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14391, Sbi_jg21635, Sbi_jg22178, Sbi_jg53564 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10191, Seu_jg16109 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008719, GOSA_00012584 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl62660, Sgl65075, Sgl67219, Sgl67282, Sgl69497, Sgl78141 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017840, gene:ENSEOMG00000023554 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0018370, CQ.Regalona.r1.2BG0020050 |
| Anacardiaceae | Pistacia vera | 12 | pistato.v30190630, pistato.v30292060, pistato.v30292930 ... |
| Apiaceae | Apium graveolens | 2 | Ag11G03937, Ag3G02237 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G007670 |
| Arecaceae | Phoenix dactylifera | 7 | gene-LOC103699073, gene-LOC103722271, gene-LOC120108406 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2828.V1.1, AsparagusV1_08.2310.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G10654 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014087m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g36120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g054050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0658 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0633 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g08440 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g21530 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6506 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.574, evm.TU.LG02.575 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00029834 |
| Poaceae | Echinochloa crus-galli | 7 | AH08.1404, AH08.1508, BH08.1363, BH08.1640, CH08.1481 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0628610, gene-QOZ80_8BG0657140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0575170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031686, gene-QYE76_049748 |
| Poaceae | Oryza coarctata | 2 | Oco15G007470, Oco16G007220 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g29530.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G114700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403108, Pt_Chr0504435, Pt_Chr0504497 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr17G012880, Chr20G007020, Chr21G006190, Chr29G006710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G066800, Tel6E01G345000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1BG003960, gene_TRIDC6AG024770 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G172500.1, TraesCS6B02G200200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb042470_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-49696, nbis-gene-50672 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22923, Zma_g24012 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2246, evm.TU.LG06.812, evm.TU.LG14.1419 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g15330 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60356.5, evm.TU.Scaffold_6_RagTag.1005 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16265 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6580 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.835 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008314 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13468 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3961 |
| Salicaceae | Populus euphratica | 2 | populus_peu09638, populus_peu24883 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621863, gene-LOC132633246 |
| Solanaceae | Solanum chilense | 1 | SOLCI001738200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011904, gene-LOC107014125 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6305 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0180 |