Basic Information
Locus ID:
gene_19921
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 14481468 | 14499131 | + | gene_19921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 58,107.21 Da | 62.84 | 77.29 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 342 | 516 | 1.68721E-107 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 341 | 445 | 5.7E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 9 | 105 | 9.8E-13 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 340 | 471 | 3.79E-21 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 3 | 130 | 4.2E-30 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 335 | 516 | 4.0E-71 | - |
| SMART | SM00232 | pad1_6 | 341 | 469 | 8.0E-17 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 342 | 470 | 31.007622 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 144 | - | - |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_010678011.1 | AMSH-like ubiquitin thioesterase 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ETU7 | MPN domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology