Basic Information
Locus ID:
gene_19906
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 13704855 | 13718853 | + | gene_19906 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 60,128.61 Da | 62.34 | 56.80 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 401 | 429 | 2.6E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 314 | 340 | 1.0E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 486 | 509 | 2.7E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 452 | 479 | 3.7E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 363 | 390 | 1.1E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 357 | 389 | 6.67E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 398 | 428 | 1.18E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 308 | 339 | 1.55E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 447 | 480 | 1.14E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 444 | 481 | 1.1E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 355 | 392 | 1.4E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 305 | 342 | 5.8E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 395 | 431 | 1.9E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 482 | 513 | 2.1E-9 | - |
| SMART | SM00547 | zf_4 | 403 | 427 | 9.1E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 453 | 477 | 3.5E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 486 | 510 | 6.5E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 314 | 338 | 0.02 | IPR001876 |
| SMART | SM00547 | zf_4 | 364 | 388 | 9.1E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 312 | 341 | 8.964518 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 484 | 513 | 8.964518 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 401 | 430 | 9.913063 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 362 | 391 | 9.811433 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 451 | 480 | 10.590594 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 455 | 474 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 405 | 424 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 488 | 507 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 316 | 335 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 282 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021736340.1 | zinc finger protein VAR3, chloroplastic-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A7C9CUY1 | Zinc finger protein VAR3, chloroplastic OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology