Basic Information
Locus ID:
gene_19844
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 11659593 | 11660885 | + | gene_19844 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 45,943.07 Da | 43.83 | 81.97 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 44 | 1.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 142 | 5.1E-10 | IPR036047 |
| SMART | SM00256 | fbox_2 | 8 | 48 | 0.0014 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 115 | 268 | 2.3E-21 | IPR017451 |
| Coils | Coil | Coil | 348 | 372 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021721030.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LXL6 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_19844, gene_19846, gene_19848, gene_5734 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003462 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl72718, Sgl76257, Sgl76258 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000038235 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1114, evm.TU.LG24.1115 |