Basic Information
Locus ID:
gene_1982
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
atg2484-1,g2484-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 4659607 | 4679840 | - | gene_1982 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 260,177.80 Da | 50.52 | 69.42 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11393 | bHLH_AtbHLH_like | 192 | 232 | 3.4587E-10 | - |
| Pfam | PF05641 | Agenet domain | 1929 | 1981 | 4.8E-10 | IPR008395 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 186 | 232 | 2.49E-5 | IPR036638 |
| SMART | SM00743 | agenet_At_2 | 1924 | 1988 | 0.75 | IPR014002 |
| SMART | SM00353 | finulus | 193 | 242 | 9.9E-4 | IPR011598 |
| SMART | SM00743 | agenet_At_2 | 2015 | 2073 | 8.0E-14 | IPR014002 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 187 | 236 | 10.778672 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2149 | 2168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1049 | 1087 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2178 | 2270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1313 | 1355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 944 | 1200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2245 | 2264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2090 | 2119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1876 | 1906 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1148 | 1194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1504 | 1528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1015 | 1029 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2341 | 2374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2312 | 2332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2080 | 2129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 991 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1312 | 1355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2179 | 2204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2225 | 2244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2312 | 2412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1839 | 1861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2395 | 2412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1506 | 1524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 490 | - | - |
| Coils | Coil | Coil | 1607 | 1627 | - | - |
| Coils | Coil | Coil | 1744 | 1764 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17330.3 | - | 0 |
| RefSeq | XP_010677049.2 | uncharacterized protein LOC104892759 [Beta vulgaris subsp. vulgaris] | 0 |
| F4JP43 | Protein SWOLLEN 1 OS=Arabidopsis thaliana OX=3702 GN=SWO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8F7C9 | Agenet domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g104420 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23346, jg37281 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1982 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004020 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104420 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24173, Sbi_jg8012 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12028 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010764 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52382, Sgl57676 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007783, gene:ENSEOMG00000022617 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004530, CQ.Regalona.r1.5BG0004950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142480 |
| Apiaceae | Apium graveolens | 3 | Ag6G00602, Ag6G01712, Ag8G00642 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005380, COCNU_10G003770 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711651, gene-LOC103716542 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3319.V1.1, AsparagusV1_10.788.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G25793, Ftri14G05894, Ftri16G00636 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G17330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024186m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g16850.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g072700.2N, BniB05g019060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0050 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0054 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g03800, gene.Cymno18g03850 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04750 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004065, Pov_00004184 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08381, Lb2G08382, Lb2G08400 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2920, BH01.3267, CH01.3497, CH09.628, CH09.629 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116460, gene-QOZ80_2BG0170190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0058290.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G010060, Oco20G009870 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G288100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503187 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G027900, Chr09G004840, Chr13G020000, Chr15G018950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G374200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG033390, gene_TRIDC1BG038740 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G221100.3, TraesCS1B02G234400.4 ... |
| Poaceae | Zea mays | 2 | Zm00001eb023270_P004, Zm00001eb391270_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36325, nbis-gene-37989 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12904, Zma_g15674 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3240, evm.TU.LG10.935, evm.TU.LG16.358 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g04660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.363, evm.TU.Scaffold_16_RagTag.341 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17996, nbisL1-mrna-22591 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12293, nbisL1-mrna-12294 |
| Rhizophoraceae | Ceriops zippeliana | 5 | nbisL1-mrna-20188, nbisL1-mrna-20189, nbisL1-mrna-8356 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.152, evm.TU.utg000022l.291 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014378, Maker00018688 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16152, nbisL1-mrna-3429 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10731, nbisL1-mrna-6533 |
| Salicaceae | Populus euphratica | 2 | populus_peu03006, populus_peu33890 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635126 |
| Solanaceae | Solanum chilense | 1 | SOLCI002438600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027921 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16277_chr06_-, STRG.23931_chr05_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3811, TC09G0347 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19210.v3.1 |