Basic Information
Locus ID:
gene_19786
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 10108901 | 10113073 | + | gene_19786 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 48,230.23 Da | 39.62 | 79.19 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 377 | 413 | 0.0023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 287 | 326 | 0.0046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 275 | 7.6E-7 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 156 | 216 | 8.7E-7 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 119 | 418 | 6.83E-54 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 416 | 2.1E-118 | IPR015943 |
| SMART | SM00320 | WD40_4 | 284 | 326 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 275 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 413 | 0.091 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 230 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 369 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 191 | 9.2E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 275 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 275 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 379 | 414 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 200 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 159 | 191 | 9.414692 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 400 | 414 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010671158.1 | cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L226 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology