Basic Information
Locus ID:
gene_19737
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 8610176 | 8611092 | + | gene_19737 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 18,753.69 Da | 25.57 | 88.02 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 90 | 152 | 2.09848E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 14 | 75 | 1.5E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 90 | 151 | 2.2E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 8 | 153 | 1.56E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 2 | 83 | 1.7E-19 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 86 | 160 | 1.0E-23 | - |
| SMART | SM00054 | efh_1 | 126 | 154 | 2.4E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 51 | 79 | 0.16 | IPR002048 |
| SMART | SM00054 | efh_1 | 15 | 43 | 0.0086 | IPR002048 |
| SMART | SM00054 | efh_1 | 90 | 118 | 6.1E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 47 | 82 | 10.468573 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 11 | 46 | 13.871811 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 122 | 157 | 13.286007 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 86 | 121 | 14.513405 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 99 | 111 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 60 | 72 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 135 | 147 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 24 | 36 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_021761238.1 | probable calcium-binding protein CML15 [Chenopodium quinoa] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A200QIA3 | EF-hand domain OS=Macleaya cordata OX=56857 GN=BVC80_1593g2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology