Basic Information
Locus ID:
gene_19703
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
mTERF
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 7885326 | 7888329 | + | gene_19703 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 48,744.81 Da | 45.87 | 105.74 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 115 | 231 | 7.9E-10 | IPR003690 |
| Pfam | PF02536 | mTERF | 261 | 334 | 1.0E-13 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 91 | 379 | 5.4E-35 | IPR038538 |
| SMART | SM00733 | mt_12 | 103 | 133 | 560.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 138 | 168 | 1.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 209 | 239 | 140.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 276 | 307 | 0.097 | IPR003690 |
| SMART | SM00733 | mt_12 | 173 | 204 | 0.083 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74120.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_010695253.2 | transcription termination factor MTERF15, mitochondrial [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C6A1 | Transcription termination factor MTERF15, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QUN2 | Mitochodrial transcription termination factor-related protein OS=Spinacia oleracea OX=3562 GN=SOVF_139010 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25689 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19703 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001234 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30976, Sbi_jg58300 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25906 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004771 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl54849 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000007037, gene:ENSEOMG00000020666 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0019200, CQ.Regalona.r1.5BG0020480 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30145210 |
| Apiaceae | Apium graveolens | 1 | Ag7G02397 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G016050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698269 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.1968.V1.1, AsparagusV1_Unassigned.1097.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G17803 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018549m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g052580.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1762 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1915 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05890 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g11760 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG01.2267, evm.TU.LG10.521, evm.TU.LG10.527 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3499, BH05.3502, CH05.3649 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0440640 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0343060.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002216 |
| Poaceae | Oryza coarctata | 2 | Oco23G006670, Oco24G006360 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g30610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G099200 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr27G005650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G130400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG036950, gene_TRIDC4BG012580 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G234300.1.cds1, TraesCS4B02G080900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb136360_P005 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53819 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25835 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.77, evm.TU.LG09.1307 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g10640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.221 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14210 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19525 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14354 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000005l.101 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16914 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19004 |
| Salicaceae | Populus euphratica | 2 | populus_peu05020, populus_peu05054 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610207 |
| Solanaceae | Solanum chilense | 1 | SOLCI005684500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031295 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14650_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0815 |
| Zosteraceae | Zostera marina | 1 | Zosma03g04810.v3.1 |