Basic Information
Locus ID:
gene_19668
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 6994168 | 7010515 | + | gene_19668 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 93,990.40 Da | 49.64 | 72.13 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 43 | 94 | 2.1E-6 | IPR027370 |
| Pfam | PF07839 | Plant calmodulin-binding domain | 724 | 833 | 7.3E-29 | IPR012417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 36 | 101 | 4.59E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 134 | 1.8E-10 | IPR013083 |
| SMART | SM01054 | CaM_binding_2 | 720 | 833 | 4.8E-23 | IPR012417 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 43 | 98 | 10.099292 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 62 | 71 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 679 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 747 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 724 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010678433.2 | uncharacterized protein LOC104893985 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803L9E5 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology