Basic Information
Locus ID:
gene_19626
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 6359629 | 6371259 | + | gene_19626 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 34,038.75 Da | 47.02 | 58.50 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 225 | 283 | 2.5E-27 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 43 | 123 | 2.3E-21 | IPR008913 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 178 | 220 | 1.3E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 176 | 227 | 5.5E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 40 | 112 | 4.32E-19 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 114 | 171 | 1.7E-20 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 251 | 289 | 2.5E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 250 | 6.5E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 178 | 220 | 6.6E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 113 | 177 | 34.580135 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 178 | 221 | 11.338544 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 36 | 111 | 25.544924 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_010666396.2 | E3 ubiquitin-protein ligase MIEL1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZPQ2 | E3 ubiquitin-protein ligase MIEL1-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology