Basic Information
Locus ID:
gene_19609
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 6031826 | 6039707 | + | gene_19609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 16,307.09 Da | 70.31 | 70.98 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 1 | 136 | 2.90299E-72 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 2 | 135 | 7.8E-52 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 141 | 1.25E-59 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 140 | 7.1E-65 | IPR016135 |
| SMART | SM00212 | ubc_7 | 1 | 141 | 5.2E-64 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 141 | 58.208916 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 68 | 83 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_007152325.1 | hypothetical protein PHAVU_004G120300g [Phaseolus vulgaris] | 0 |
| P42745 | Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A833XU04 | UBC core domain-containing protein OS=Juglans regia OX=51240 GN=F2P56_003650 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology