Basic Information
Locus ID:
gene_19607
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase RING1-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 5996353 | 5999588 | + | gene_19607 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 44,091.07 Da | 43.21 | 90.92 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 329 | 377 | 2.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 383 | 1.97E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 383 | 3.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 330 | 376 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 330 | 377 | 12.120453 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010653554.1 | PREDICTED: E3 ubiquitin-protein ligase RNF130-like [Vitis vinifera] | 0 |
| Q9BV68 | E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens OX=9606 GN=RNF126 PE=1 SV=2 | 0 | |
| TrEMBL | A0A438H8B1 | E3 ubiquitin-protein ligase RING1-like OS=Vitis vinifera OX=29760 GN=VvCHDp000839_6 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 12 | gene_13763, gene_13765, gene_17629, gene_17723, gene_17724 ... |